Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERPINB1Serpin family B member 1; Belongs to the serpin family. (341 aa)    
Predicted Functional Partners:
S4REY0_PETMA
Uncharacterized protein; Belongs to the peptidase S1 family. Plasminogen subfamily.
  
 0.830
S4RT88_PETMA
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.600
S4RUJ3_PETMA
OBG-type G domain-containing protein.
     
 0.575
S4R8E1_PETMA
Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
 
      0.564
S4RHA9_PETMA
Uncharacterized protein; Belongs to the GST superfamily.
    
 
 0.536
S4RD89_PETMA
Coagulation factor X.
  
 0.530
S4RWE9_PETMA
Uncharacterized protein.
  
 0.530
S4RYM8_PETMA
Coagulation factor X.
  
 0.530
FGG
Fibrinogen gamma chain; Together with fibrinogen alpha (FGA) and fibrinogen beta (FGB), polymerizes to form an insoluble fibrin matrix. Has a major function in hemostasis as one of the primary components of blood clots.
   
 0.529
FIBB_PETMA
Fibrinogen beta chain; Fibrinogen has a double function: yielding monomers that polymerize into fibrin and acting as a cofactor in platelet aggregation.
   
 0.529
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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