Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4RAE5_PETMAUncharacterized protein. (205 aa)    
Predicted Functional Partners:
S4R4M6_PETMA
ProRS-C_1 domain-containing protein.
  
 0.999
S4R4M7_PETMA
Uncharacterized protein.
  
 0.999
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 0.999
S4RKP2_PETMA
Essential meiotic structure-specific endonuclease 1.
    
 0.998
S4R805_PETMA
MUS81 structure-specific endonuclease subunit.
  
 0.997
S4RZP7_PETMA
Excision repair cross-complementation group 1.
   
 0.997
S4RTM3_PETMA
tRNA-binding domain-containing protein.
  
 0.993
S4RJH0_PETMA
MutS homolog 2 (E. coli).
    
 
 0.976
S4R5V3_PETMA
tRNA-synt_1 domain-containing protein.
  
 0.972
S4RDE2_PETMA
Helicase ATP-binding domain-containing protein.
  
 0.970
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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