Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RAE7_PETMAUncharacterized protein. (287 aa)    
Predicted Functional Partners:
S4S184_PETMA
LIM zinc-binding domain-containing protein.
    
 0.975
S4RII8_PETMA
Uncharacterized protein.
    
 0.952
LDB2
LIM domain binding 2.
    
 0.952
S4RFN6_PETMA
LIM domain only 4b.
    
   0.878
S4RFT8_PETMA
Uncharacterized protein.
   
 0.871
S4RS24_PETMA
Single stranded DNA binding protein 3b.
    
 
 0.827
S4R4S7_PETMA
GATA binding protein 4.
    
 0.819
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
    
   0.816
S4RGP9_PETMA
Uncharacterized protein.
   
 0.772
S4R7F6_PETMA
Homeobox domain-containing protein.
   
 0.751
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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