Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SYT6Synaptotagmin 6. (243 aa)    
Predicted Functional Partners:
S4R4U6_PETMA
C2 domain-containing protein.
 
     
0.898
S4R5Z2_PETMA
Syntaxin 1A (brain).
    
 0.696
SNAP25-2
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.670
S4RTF1_PETMA
V-SNARE coiled-coil homology domain-containing protein.
    
 0.638
S4R7D3_PETMA
Dopamine receptor D2b; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.627
S4RLD6_PETMA
DNA cross-link repair 1B.
      
 0.613
S4RNF5_PETMA
Gem (nuclear organelle) associated protein 4.
      
 0.605
S4R7L4_PETMA
Uncharacterized protein.
      
 0.592
S4RE14_PETMA
Solute carrier family 18 member 2.
     
 0.578
S4RR09_PETMA
Uncharacterized protein.
     
 0.574
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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