Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4RAG5_PETMAFibrillar collagen NC1 domain-containing protein. (384 aa)    
Predicted Functional Partners:
S4RLG3_PETMA
Uncharacterized protein.
 
      0.900
COL1A1
VWFC domain-containing protein.
 
    
0.887
S4R5P3_PETMA
VWFC domain-containing protein.
 
    
0.864
S4RJS5_PETMA
Uncharacterized protein.
 
 
 
0.864
S4RF60_PETMA
Uncharacterized protein.
 
    
0.831
S4RXQ8_PETMA
Uncharacterized protein.
 
    
0.803
S4REX1_PETMA
Uncharacterized protein.
 
 
 
0.783
S4RLJ4_PETMA
Collagen, type IX, alpha 1a.
 
    
0.752
S4R7C8_PETMA
Uncharacterized protein.
 
    
0.751
S4RSU4_PETMA
Uncharacterized protein.
 
    
0.665
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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