Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RAG8_PETMAUncharacterized protein. (212 aa)    
Predicted Functional Partners:
XPA
XPA, DNA damage recognition and repair factor.
     
 0.689
PIK3AP1
Phosphoinositide-3-kinase adaptor protein 1.
     
 0.632
S4RA52_PETMA
Phosphoinositide phospholipase C.
     
 0.611
S4RW41_PETMA
Uncharacterized protein.
     
 0.611
S4RA94_PETMA
Glyoxalase 1.
      
 0.605
S4RQ78_PETMA
3-hydroxyisobutyrate dehydrogenase b.
    
   0.591
S4RUW0_PETMA
Homeobox domain-containing protein.
      
 0.546
S4RE19_PETMA
Tudor domain-containing protein.
      
 0.533
S4RDE2_PETMA
Helicase ATP-binding domain-containing protein.
    
  0.524
S4REK3_PETMA
Helicase ATP-binding domain-containing protein.
    
  0.524
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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