Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RAK9_PETMAUncharacterized protein. (455 aa)    
Predicted Functional Partners:
S4RMK2_PETMA
Uncharacterized protein.
    
   0.510
S4RVX9_PETMA
WD repeat domain 90.
    
   0.510
S4RK02_PETMA
Uncharacterized protein.
    
 0.498
S4RLW1_PETMA
Ig-like domain-containing protein.
    
 0.498
S4R5M9_PETMA
Uncharacterized protein.
    
 0.479
S4RG10_PETMA
Laminin N-terminal domain-containing protein.
    
 0.479
S4RT46_PETMA
Peroxiredoxin 2.
    
  0.471
S4RMT0_PETMA
Protein kinase domain-containing protein.
    
 0.466
PIDD1
P53-induced death domain protein 1.
    
 0.458
S4RHC2_PETMA
RAD50 homolog, double strand break repair protein.
    
 0.454
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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