Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RAL7_PETMAAspartate aminotransferase. (421 aa)    
Predicted Functional Partners:
S4RJ25_PETMA
Malate dehydrogenase.
   
 0.996
S4RP83_PETMA
Malate dehydrogenase.
   
 0.990
LDH_PETMA
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily. LDH family.
   
 0.989
S4R9M4_PETMA
Aspartate aminotransferase.
  
 
0.988
S4RDK6_PETMA
Glutamic pyruvate transaminase (alanine aminotransferase) 2.
   
 0.988
S4R6I4_PETMA
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.987
S4RBZ2_PETMA
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 0.981
S4R9T3_PETMA
Uncharacterized protein.
  
 
 0.980
S4RJM6_PETMA
Tyrosine aminotransferase.
   
 0.978
S4RT71_PETMA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
  
 0.950
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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