Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RAM4_PETMASpectrin_like domain-containing protein. (631 aa)    
Predicted Functional Partners:
MACF1
Microtubule actin crosslinking factor 1.
 
      0.896
S4RML6_PETMA
Uncharacterized protein.
 
      0.833
S4RC93_PETMA
Uncharacterized protein.
 
      0.829
S4RJQ3_PETMA
Uncharacterized protein.
 
      0.773
S4RHJ7_PETMA
Uncharacterized protein.
   
 0.605
S4R7J7_PETMA
Uncharacterized protein.
   
 0.572
S4RBB6_PETMA
Uncharacterized protein.
 
      0.572
S4RYD5_PETMA
Uncharacterized protein.
 
      0.571
S4RMP1_PETMA
Uncharacterized protein.
 
      0.543
CTNNB1
Catenin beta 1.
   
 0.488
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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