STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEKDEK_C domain-containing protein. (238 aa)    
Predicted Functional Partners:
S4R808_PETMA
Uncharacterized protein.
    
 
 0.952
S4R8C8_PETMA
Splicing factor 3b, subunit 1.
   
 
 0.818
S4R9I3_PETMA
MYB binding protein (P160) 1a.
     
 0.711
S4RK58_PETMA
Uncharacterized protein.
     
 0.711
S4RU90_PETMA
Excision repair cross-complementation group 6.
    
 0.708
S4R481_PETMA
K(lysine) acetyltransferase 2B.
    
  0.683
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.683
S4RSL5_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.683
SMARCA5-2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.683
S4RDI2_PETMA
Transcription factor AP-2 epsilon.
    
 0.679
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.