STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RB77_PETMABHLH domain-containing protein. (108 aa)    
Predicted Functional Partners:
S4RJD8_PETMA
LIM domain only 2 (rhombotin-like 1).
   
 0.992
S4R783_PETMA
BHLH domain-containing protein.
    
 0.933
S4R7B0_PETMA
Uncharacterized protein.
    
 0.933
S4RII8_PETMA
Uncharacterized protein.
    
 0.917
LDB2
LIM domain binding 2.
    
 0.917
S4RQD6_PETMA
GATA binding protein 3.
   
 0.864
S4R4S7_PETMA
GATA binding protein 4.
   
 0.863
S4R5F3_PETMA
RunxI domain-containing protein.
    
 0.847
S4RDV0_PETMA
Uncharacterized protein.
   
 0.820
S4R5X9_PETMA
Core-binding factor subunit beta.
     
 0.720
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.