Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
S4RBB9_PETMARegulatory factor X, 1b (influences HLA class II expression). (662 aa)    
Predicted Functional Partners:
S4RCE3_PETMA
Forkhead box J3.
    
 
 0.920
S4RDW5_PETMA
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.906
S4RMY5_PETMA
Forkhead box J1b.
    
 
 0.899
S4RQ17_PETMA
Forkhead box J1b.
    
 
 0.899
S4RD13_PETMA
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
    
   0.887
S4S162_PETMA
Forkhead box L2b.
    
 
 0.884
S4RH06_PETMA
Cyclin D binding myb-like transcription factor 1.
    
   0.830
S4R746_PETMA
Uncharacterized protein.
   
   0.775
ESPL1
Extra spindle pole bodies like 1, separase.
    
   0.755
S4RBM3_PETMA
ADP-ribosylation factor-like 13b.
      
 0.698
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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