STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RCE0_PETMAHMG-box transcription factor 1. (487 aa)    
Predicted Functional Partners:
S4R8K9_PETMA
HDAC_interact domain-containing protein.
   
 
 0.859
S4RY86_PETMA
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
     
 0.648
S4RA69_PETMA
Mitogen-activated protein kinase.
     
 0.632
S4RVM7_PETMA
Mitogen-activated protein kinase.
     
 0.632
S4RVR8_PETMA
Mitogen-activated protein kinase.
     
 0.632
S4RL86_PETMA
Mitochondrial translational initiation factor 2.
      
 0.483
S4R9W6_PETMA
Required for meiotic nuclear division 5 homolog B.
    
 
 0.454
S4RQ92_PETMA
GID complex subunit 8 homolog b (S. cerevisiae).
    
 
 0.449
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.