S4RCG1_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4RCG1_PETMA

Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1302 aa)

Predicted Functional Partners:

S4RS81_PETMA

0.850

S4RPE1_PETMA

0.827

S4RUW3_PETMA

0.635

S4R9I2_PETMA

0.634

S4RDJ7_PETMA

0.633

S4R4V3_PETMA

0.628

S4RJM8_PETMA

0.628

S4RKY5_PETMA

0.602

S4RL65_PETMA

0.602

S4RQ15_PETMA

0.602

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R4V3_PETMA	S4RCG1_PETMA	ENSPMAP00000000233	ENSPMAP00000002893	Pyruvate kinase; Belongs to the pyruvate kinase family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.628
S4R4V3_PETMA	S4RS81_PETMA	ENSPMAP00000000233	ENSPMAP00000008070	Pyruvate kinase; Belongs to the pyruvate kinase family.	NDK domain-containing protein; Belongs to the NDK family.	0.914
S4R4V3_PETMA	S4RUW3_PETMA	ENSPMAP00000000233	ENSPMAP00000009003	Pyruvate kinase; Belongs to the pyruvate kinase family.	GTP_cyclohydroI domain-containing protein.	0.811
S4R9I2_PETMA	S4RCG1_PETMA	ENSPMAP00000001863	ENSPMAP00000002893	PhoLip_ATPase_C domain-containing protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.634
S4R9I2_PETMA	S4RPE1_PETMA	ENSPMAP00000001863	ENSPMAP00000007077	PhoLip_ATPase_C domain-containing protein.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.498
S4RCG1_PETMA	S4R4V3_PETMA	ENSPMAP00000002893	ENSPMAP00000000233	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.628
S4RCG1_PETMA	S4R9I2_PETMA	ENSPMAP00000002893	ENSPMAP00000001863	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	PhoLip_ATPase_C domain-containing protein.	0.634
S4RCG1_PETMA	S4RDJ7_PETMA	ENSPMAP00000002893	ENSPMAP00000003279	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Coiled-coil domain containing 103.	0.633
S4RCG1_PETMA	S4RJM8_PETMA	ENSPMAP00000002893	ENSPMAP00000005411	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Poly [ADP-ribose] polymerase.	0.628
S4RCG1_PETMA	S4RKY5_PETMA	ENSPMAP00000002893	ENSPMAP00000005868	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.602
S4RCG1_PETMA	S4RL65_PETMA	ENSPMAP00000002893	ENSPMAP00000005951	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	0.602
S4RCG1_PETMA	S4RPE1_PETMA	ENSPMAP00000002893	ENSPMAP00000007077	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.827
S4RCG1_PETMA	S4RQ15_PETMA	ENSPMAP00000002893	ENSPMAP00000007301	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.602
S4RCG1_PETMA	S4RS81_PETMA	ENSPMAP00000002893	ENSPMAP00000008070	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	NDK domain-containing protein; Belongs to the NDK family.	0.850
S4RCG1_PETMA	S4RUW3_PETMA	ENSPMAP00000002893	ENSPMAP00000009003	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	GTP_cyclohydroI domain-containing protein.	0.635
S4RDJ7_PETMA	S4RCG1_PETMA	ENSPMAP00000003279	ENSPMAP00000002893	Coiled-coil domain containing 103.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.633
S4RDJ7_PETMA	S4RPE1_PETMA	ENSPMAP00000003279	ENSPMAP00000007077	Coiled-coil domain containing 103.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.507
S4RDJ7_PETMA	S4RS81_PETMA	ENSPMAP00000003279	ENSPMAP00000008070	Coiled-coil domain containing 103.	NDK domain-containing protein; Belongs to the NDK family.	0.418
S4RJM8_PETMA	S4RCG1_PETMA	ENSPMAP00000005411	ENSPMAP00000002893	Poly [ADP-ribose] polymerase.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.628
S4RJM8_PETMA	S4RS81_PETMA	ENSPMAP00000005411	ENSPMAP00000008070	Poly [ADP-ribose] polymerase.	NDK domain-containing protein; Belongs to the NDK family.	0.914