S4RCS1_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4RCS1_PETMA

NADH:ubiquinone oxidoreductase subunit A11. (153 aa)

Predicted Functional Partners:

S4RJL6_PETMA

0.799

S4RDW6_PETMA

0.794

NDUFAB1

0.752

S4R9X9_PETMA

0.706

NDUFA13

0.669

S4RHC7_PETMA

0.542

S4RY36_PETMA

0.528

S4RZW6_PETMA

0.511

S4R7N7_PETMA

0.505

S4RFH5_PETMA

0.505

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NDUFA13	NDUFAB1	ENSPMAP00000002677	ENSPMAP00000008252	NADH:ubiquinone oxidoreductase subunit A13.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
NDUFA13	S4R7N7_PETMA	ENSPMAP00000002677	ENSPMAP00000001217	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit B7.	0.999
NDUFA13	S4R9X9_PETMA	ENSPMAP00000002677	ENSPMAP00000002010	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit B5.	0.999
NDUFA13	S4RCS1_PETMA	ENSPMAP00000002677	ENSPMAP00000003003	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit A11.	0.669
NDUFA13	S4RDW6_PETMA	ENSPMAP00000002677	ENSPMAP00000003398	NADH:ubiquinone oxidoreductase subunit A13.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
NDUFA13	S4RFH5_PETMA	ENSPMAP00000002677	ENSPMAP00000003957	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit A7.	0.999
NDUFA13	S4RHC7_PETMA	ENSPMAP00000002677	ENSPMAP00000004609	NADH:ubiquinone oxidoreductase subunit A13.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.770
NDUFA13	S4RJL6_PETMA	ENSPMAP00000002677	ENSPMAP00000005399	NADH:ubiquinone oxidoreductase subunit A13.	Uncharacterized protein.	0.999
NDUFA13	S4RY36_PETMA	ENSPMAP00000002677	ENSPMAP00000010127	NADH:ubiquinone oxidoreductase subunit A13.	NADH:ubiquinone oxidoreductase subunit A9a.	0.999
NDUFA13	S4RZW6_PETMA	ENSPMAP00000002677	ENSPMAP00000010757	NADH:ubiquinone oxidoreductase subunit A13.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999
NDUFAB1	NDUFA13	ENSPMAP00000008252	ENSPMAP00000002677	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH:ubiquinone oxidoreductase subunit A13.	0.999
NDUFAB1	S4R7N7_PETMA	ENSPMAP00000008252	ENSPMAP00000001217	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH:ubiquinone oxidoreductase subunit B7.	0.999
NDUFAB1	S4R9X9_PETMA	ENSPMAP00000008252	ENSPMAP00000002010	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH:ubiquinone oxidoreductase subunit B5.	0.999
NDUFAB1	S4RCS1_PETMA	ENSPMAP00000008252	ENSPMAP00000003003	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH:ubiquinone oxidoreductase subunit A11.	0.752
NDUFAB1	S4RDW6_PETMA	ENSPMAP00000008252	ENSPMAP00000003398	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
NDUFAB1	S4RFH5_PETMA	ENSPMAP00000008252	ENSPMAP00000003957	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH:ubiquinone oxidoreductase subunit A7.	0.999
NDUFAB1	S4RHC7_PETMA	ENSPMAP00000008252	ENSPMAP00000004609	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.929
NDUFAB1	S4RJL6_PETMA	ENSPMAP00000008252	ENSPMAP00000005399	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.999
NDUFAB1	S4RY36_PETMA	ENSPMAP00000008252	ENSPMAP00000010127	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH:ubiquinone oxidoreductase subunit A9a.	0.999
NDUFAB1	S4RZW6_PETMA	ENSPMAP00000008252	ENSPMAP00000010757	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999