STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RCV4_PETMAProtein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2a. (233 aa)    
Predicted Functional Partners:
S4RIQ9_PETMA
Cullin 5a; Belongs to the cullin family.
    
   0.470
S4R4M6_PETMA
ProRS-C_1 domain-containing protein.
     
 0.468
S4R4M7_PETMA
Uncharacterized protein.
     
 0.468
SODM_PETMA
Superoxide dismutase [Mn], mitochondrial; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
  
  
 0.436
S4RSE5_PETMA
Flavodoxin-like domain-containing protein.
   
    0.435
S4RVH2_PETMA
Uncharacterized protein.
  
  
 0.404
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.