Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RCW3_PETMAUncharacterized protein. (372 aa)    
Predicted Functional Partners:
S4RXP3_PETMA
RNB domain-containing protein.
 
      0.900
S4RMI2_PETMA
Terminal uridylyl transferase 1, U6 snRNA-specific.
    
 
 0.818
S4RDG8_PETMA
5'-3' exoribonuclease 1.
    
 0.806
S4RGQ4_PETMA
Poly(A)-specific ribonuclease (deadenylation nuclease).
     
 0.722
S4RML3_PETMA
Uncharacterized protein.
  
 
 0.718
S4R7X0_PETMA
Exosome component 4.
   
 0.688
S4RMJ2_PETMA
Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting).
      
 0.667
S4RUT2_PETMA
Exosome component 3.
   
 0.663
S4RRL6_PETMA
PAP-associated domain-containing protein.
    
 0.645
USB1
U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.
    
 
 0.635
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (16%) [HD]