Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RD13_PETMABTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1848 aa)    
Predicted Functional Partners:
S4RMF9_PETMA
DR1-associated protein 1 (negative cofactor 2 alpha).
    
 
 0.961
TBP
TATA box binding protein.
    
 
 0.960
PHF12
PHD finger protein 12.
   
 
 0.932
S4RCI0_PETMA
TBP-like 1.
    
 
 0.904
S4RBB9_PETMA
Regulatory factor X, 1b (influences HLA class II expression).
    
   0.887
S4R481_PETMA
K(lysine) acetyltransferase 2B.
    
 
 0.865
S4RLM5_PETMA
TAF domain-containing protein.
    
 
 0.854
S4RH06_PETMA
Cyclin D binding myb-like transcription factor 1.
   
 
 0.849
S4REI8_PETMA
TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
   
 
 0.848
S4RJY2_PETMA
SCA7 domain-containing protein.
    
   0.839
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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