Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RAB29RAB29, member RAS oncogene family. (141 aa)    
Predicted Functional Partners:
S4RWF4_PETMA
Uncharacterized protein.
    
 
 0.852
S4R4B3_PETMA
PPM-type phosphatase domain-containing protein.
    
 
 0.677
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.675
S4RV15_PETMA
Peptidase M20 domain containing 1, tandem duplicate 1.
      
 0.647
S4RUY1_PETMA
Chitinase domain containing 1; Belongs to the glycosyl hydrolase 18 family.
      
 0.619
S4RQG7_PETMA
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.594
S4R920_PETMA
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.577
S4RRC0_PETMA
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.577
S4R639_PETMA
RAB3A interacting protein (rabin3).
      
 0.573
S4RYS9_PETMA
Uncharacterized protein.
      
 0.532
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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