STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RD77_PETMARAB27A, member RAS oncogene family. (129 aa)    
Predicted Functional Partners:
S4RWQ4_PETMA
RAB3C, member RAS oncogene family.
  
  
0.749
S4RPY4_PETMA
RAB, member of RAS oncogene family-like 2.
  
  
  0.678
S4RYH1_PETMA
RAB11B, member RAS oncogene family, a.
  
  
 
0.618
S4RQG7_PETMA
Protein prenyltransferase alpha subunit repeat containing 1.
     
 0.586
S4R4G8_PETMA
Rab geranylgeranyltransferase subunit beta.
     
 0.564
RPL37A
Ribosomal protein L37a.
     
 0.525
S4R920_PETMA
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.525
S4RRC0_PETMA
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.525
LAMP5
Lysosomal associated membrane protein family member 5.
     
 0.416
S4RWV1_PETMA
Uncharacterized protein.
     
 0.416
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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