Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RDG1_PETMAUncharacterized protein. (80 aa)    
Predicted Functional Partners:
S4R5Q3_PETMA
G elongation factor, mitochondrial 2.
  
  
 0.646
S4R5A2_PETMA
SPG7 matrix AAA peptidase subunit, paraplegin.
   
 
 0.628
S4RLR5_PETMA
BTB (POZ) domain containing 9.
      
 0.597
S4S010_PETMA
Signal peptidase complex catalytic subunit SEC11.
     
 0.555
GUF1
Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.
  
 
 0.551
IMMP2L
Inner mitochondrial membrane peptidase subunit 2.
     
  0.540
WDR24
WD repeat domain 24.
    
 0.533
S4R9M5_PETMA
NPR2 like, GATOR1 complex subunit.
    
 0.508
S4RXN1_PETMA
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.503
S4RND6_PETMA
Uncharacterized protein.
     
 0.493
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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