Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RDH3_PETMAExonuclease domain-containing protein. (229 aa)    
Predicted Functional Partners:
REXO2
Small fragment nuclease.
    
 0.958
S4RTM7_PETMA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.761
S4RJB0_PETMA
Uncharacterized protein.
    
 
 0.727
PAN3
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]
    
 0.721
S4RTB0_PETMA
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
   
  
 0.702
PNPT1
Polyribonucleotide nucleotidyltransferase 1.
  
 
 0.695
S4RB83_PETMA
WD repeat domain 61.
      
 0.694
S4RRF2_PETMA
Uncharacterized protein.
   
 
 0.669
S4RA80_PETMA
GMPS ATP-PPase domain-containing protein.
  
 
 0.662
S4RG40_PETMA
XPA binding protein 2.
   
  
 0.642
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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