Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RDI0_PETMAFACT-Spt16_Nlob domain-containing protein. (514 aa)    
Predicted Functional Partners:
S4RR07_PETMA
Uncharacterized protein.
   
 0.998
S4RN13_PETMA
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.993
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.988
S4RSY1_PETMA
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.985
S4RR50_PETMA
Transcription elongation factor SPT5.
   
 0.984
S4RJB6_PETMA
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.981
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.972
S4R4W7_PETMA
Ring finger protein 146.
    
   0.966
S4RJW7_PETMA
RPOL4c domain-containing protein.
    
 0.958
S4RTQ9_PETMA
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
   
 0.958
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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