STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RDM4_PETMASphingomyelin phosphodiesterase 1, acid lysosomal. (516 aa)    
Predicted Functional Partners:
S4RV16_PETMA
N-acylsphingosine amidohydrolase (acid ceramidase) 1b.
   
 0.912
S4RBV7_PETMA
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.901
S4RGT9_PETMA
PAP2_C domain-containing protein.
     
 0.897
S4RMS8_PETMA
Glucosylceramidase.
   
 
 0.894
S4R7J1_PETMA
Uncharacterized protein.
     
 0.883
S4R8Y6_PETMA
Galactosylceramidase a.
     
 0.867
S4R5F4_PETMA
Neutral ceramidase.
     
 0.860
S4R4L0_PETMA
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.854
S4RFB0_PETMA
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.840
S4RNB0_PETMA
Ceramide kinase-like.
    
 0.840
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.