Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RE16_PETMAWD repeat domain 13. (485 aa)    
Predicted Functional Partners:
S4RM36_PETMA
Uncharacterized protein.
    
 0.731
S4RHF3_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.696
RANBP2
RAN binding protein 2.
    
 0.696
S4RR22_PETMA
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
    
 
 0.672
S4RCV9_PETMA
RNA binding motif protein X-linked.
    
 0.657
S4RD92_PETMA
SET nuclear proto-oncogene b; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.654
S4R8Y3_PETMA
Uncharacterized protein.
    
 
 0.632
S4RGH3_PETMA
TNFR-Cys domain-containing protein.
    
 
 0.623
S4RSL0_PETMA
Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.
    
 0.602
S4S0A5_PETMA
Uncharacterized protein.
    
 0.590
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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