YTHDC2 protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCBP1	S4R6C3_PETMA	ENSPMAP00000006129	ENSPMAP00000000753	Nuclear cap binding protein subunit 1.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.756
NCBP1	S4RDI5_PETMA	ENSPMAP00000006129	ENSPMAP00000003267	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.713
NCBP1	S4RJG0_PETMA	ENSPMAP00000006129	ENSPMAP00000005342	Nuclear cap binding protein subunit 1.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.713
NCBP1	S4RJI1_PETMA	ENSPMAP00000006129	ENSPMAP00000005364	Nuclear cap binding protein subunit 1.	Exosome component 9.	0.849
NCBP1	S4RNS0_PETMA	ENSPMAP00000006129	ENSPMAP00000006856	Nuclear cap binding protein subunit 1.	Poly(A) binding protein, nuclear 1.	0.992
NCBP1	S4RPJ3_PETMA	ENSPMAP00000006129	ENSPMAP00000007129	Nuclear cap binding protein subunit 1.	Poly(A) polymerase alpha.	0.713
NCBP1	S4RS80_PETMA	ENSPMAP00000006129	ENSPMAP00000008069	Nuclear cap binding protein subunit 1.	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.810
NCBP1	S4RZJ8_PETMA	ENSPMAP00000006129	ENSPMAP00000010639	Nuclear cap binding protein subunit 1.	Mtr4 exosome RNA helicase.	0.991
NCBP1	S4RZZ2_PETMA	ENSPMAP00000006129	ENSPMAP00000010783	Nuclear cap binding protein subunit 1.	Cleavage stimulation factor, 3' pre-RNA, subunit 1.	0.800
NCBP1	YTHDC2	ENSPMAP00000006129	ENSPMAP00000003531	Nuclear cap binding protein subunit 1.	YTH domain containing 2.	0.967
S4R6C3_PETMA	NCBP1	ENSPMAP00000000753	ENSPMAP00000006129	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Nuclear cap binding protein subunit 1.	0.756
S4R6C3_PETMA	S4RDI5_PETMA	ENSPMAP00000000753	ENSPMAP00000003267	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Uncharacterized protein.	0.702
S4R6C3_PETMA	S4RJG0_PETMA	ENSPMAP00000000753	ENSPMAP00000005342	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.702
S4R6C3_PETMA	S4RNS0_PETMA	ENSPMAP00000000753	ENSPMAP00000006856	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Poly(A) binding protein, nuclear 1.	0.881
S4R6C3_PETMA	S4RPJ3_PETMA	ENSPMAP00000000753	ENSPMAP00000007129	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Poly(A) polymerase alpha.	0.702
S4R6C3_PETMA	S4RS80_PETMA	ENSPMAP00000000753	ENSPMAP00000008069	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Cleavage stimulation factor, 3' pre-RNA, subunit 3.	0.916
S4R6C3_PETMA	S4RZZ2_PETMA	ENSPMAP00000000753	ENSPMAP00000010783	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Cleavage stimulation factor, 3' pre-RNA, subunit 1.	0.955
S4R6C3_PETMA	YTHDC2	ENSPMAP00000000753	ENSPMAP00000003531	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	YTH domain containing 2.	0.955
S4RDI5_PETMA	NCBP1	ENSPMAP00000003267	ENSPMAP00000006129	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.713
S4RDI5_PETMA	S4R6C3_PETMA	ENSPMAP00000003267	ENSPMAP00000000753	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.702