STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4REF7_PETMASi:ch211-212d10.2. (125 aa)    
Predicted Functional Partners:
S4RGT3_PETMA
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
    
 
 0.567
S4RAY0_PETMA
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 
 0.544
ENSPMAP00000002379
annotation not available
   
 
 0.544
ENSPMAP00000002380
annotation not available
   
 
 0.544
ENSPMAP00000002382
annotation not available
   
 
 0.544
S4RJD3_PETMA
E1A binding protein p300 a.
   
 0.538
S4RM71_PETMA
Uncharacterized protein.
   
 0.538
S4R5U4_PETMA
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
 
 0.529
S4RRJ7_PETMA
CULT domain-containing protein.
    
 
 0.506
S4R5R2_PETMA
E2F_TDP domain-containing protein.
    
 
 0.497
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.