Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4REH1_PETMAMesoderm specific transcript. (159 aa)    
Predicted Functional Partners:
S4REJ2_PETMA
Centrosomal protein 41.
      
 0.792
S4R719_PETMA
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.774
S4RLD8_PETMA
Aminoadipate-semialdehyde dehydrogenase.
    
 0.711
S4R608_PETMA
DNA-damage regulated autophagy modulator 2b.
      
 0.675
NDUFAB1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.668
S4RTB3_PETMA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.668
COPG1
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
      
 0.666
ISOC2
Isochorismatase domain containing 2.
  
 0.650
S4RA53_PETMA
Uncharacterized protein; Belongs to the TCP-1 chaperonin family.
   
 
 0.625
S4RPJ9_PETMA
3-oxoacid CoA transferase 1b.
  
 
 0.622
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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