STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4REI8_PETMATAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (590 aa)    
Predicted Functional Partners:
S4R685_PETMA
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.999
S4RDR8_PETMA
TAFH domain-containing protein.
   
 0.999
S4RGS3_PETMA
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.999
TBP
TATA box binding protein.
    
 0.999
S4REE3_PETMA
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.997
S4RJY2_PETMA
SCA7 domain-containing protein.
    
 0.995
S4R5K3_PETMA
Uncharacterized protein.
   
 0.989
S4RNB6_PETMA
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.989
S4RLM5_PETMA
TAF domain-containing protein.
   
 0.986
ENY2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.983
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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