STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4REK3_PETMAHelicase ATP-binding domain-containing protein. (272 aa)    
Predicted Functional Partners:
S4R5L5_PETMA
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.999
S4R670_PETMA
Uncharacterized protein.
   
 0.999
S4R805_PETMA
MUS81 structure-specific endonuclease subunit.
    
 0.999
S4RC13_PETMA
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
   
 0.999
S4RIL8_PETMA
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.999
S4RJK6_PETMA
Helicase C-terminal domain-containing protein.
   
 0.999
S4RMQ1_PETMA
FA complementation group L.
    
 0.999
S4RP14_PETMA
FA core complex associated protein 24.
   
 0.999
S4RQ99_PETMA
NPL4 homolog, ubiquitin recognition factor.
   
 0.999
S4RV86_PETMA
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.999
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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