Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4REX1_PETMAUncharacterized protein. (863 aa)    
Predicted Functional Partners:
S4RIH0_PETMA
Collagen IV NC1 domain-containing protein.
 
  
  0.927
S4REP7_PETMA
LAM_G_DOMAIN domain-containing protein.
 
  
  0.898
S4RHX2_PETMA
Uncharacterized protein.
    
 
 0.896
S4RLG3_PETMA
Uncharacterized protein.
 
  
  0.892
S4RM85_PETMA
ARID domain-containing protein.
    
 0.882
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
    
 0.882
S4RMK2_PETMA
Uncharacterized protein.
    
 0.876
S4RVX9_PETMA
WD repeat domain 90.
    
 0.876
S4RF48_PETMA
Growth arrest-specific 7a.
    
 0.868
S4R848_PETMA
Uncharacterized protein.
    
 0.867
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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