STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RF66_PETMAIntraflagellar transport 20 homolog (Chlamydomonas). (90 aa)    
Predicted Functional Partners:
S4RRM9_PETMA
Thyroid hormone receptor interactor 11.
   
 0.962
S4RKI6_PETMA
Intraflagellar transport 88 homolog.
    
 0.942
S4RAS9_PETMA
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.939
S4RZP3_PETMA
RING-type domain-containing protein.
   
 0.937
S4RIE6_PETMA
MIP-T3 domain-containing protein.
    
 0.935
S4R8I3_PETMA
Clusterin associated protein 1.
    
 0.924
S4R4Q5_PETMA
Fleer.
    
 0.917
IFT172
Uncharacterized protein.
    
 0.895
S4R677_PETMA
Intraflagellar transport 27 homolog (Chlamydomonas).
    
 0.881
S4R7C2_PETMA
Uncharacterized protein.
    
 0.875
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.