STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RFL8_PETMACalponin-homology (CH) domain-containing protein. (84 aa)    
Predicted Functional Partners:
S4RMK2_PETMA
Uncharacterized protein.
    
 
 0.992
S4RVX9_PETMA
WD repeat domain 90.
    
 
 0.992
ENKUR
Enkurin, TRPC channel interacting protein.
   
 
 0.959
PACRGL
Parkin coregulated like.
    
 
 0.955
S4R631_PETMA
EF-hand domain (C-terminal) containing 1.
    
 
 0.953
S4RIM5_PETMA
Uncharacterized protein.
    
   0.941
S4R7F4_PETMA
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.908
S4RJA6_PETMA
Tubulin domain-containing protein.
   
 0.908
TUBA3C
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.908
S4RE10_PETMA
Lymphocyte cytosolic protein 1 (L-plastin).
   
 
 0.863
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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