Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4RFM0_PETMAUncharacterized protein. (207 aa)    
Predicted Functional Partners:
S4RQR4_PETMA
LTV1 ribosome biogenesis factor.
   
 0.998
S4R776_PETMA
Bystin-like.
   
 0.997
TSR1
TSR1 ribosome maturation factor.
   
 0.994
S4RT99_PETMA
Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.
   
 0.994
S4RXD7_PETMA
ZP domain-containing protein.
   
 
 0.991
S4RJV4_PETMA
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.987
S4R4U3_PETMA
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 0.985
S4RSV7_PETMA
Ribosomal RNA processing 12 homolog.
   
 
 0.985
S4RSN8_PETMA
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.984
S4RTQ6_PETMA
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.981
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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