Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
S4RFM8_PETMAF5/8 type C domain-containing protein. (161 aa)    
Predicted Functional Partners:
S4RMH5_PETMA
Uncharacterized protein.
 
    
 0.902
S4RLM2_PETMA
Uncharacterized protein; Belongs to the multicopper oxidase family.
 
 
    0.899
S4RYU6_PETMA
Plastocyanin-like domain-containing protein.
 
 
    0.899
S4RP12_PETMA
Plastocyanin-like domain-containing protein; Belongs to the multicopper oxidase family.
 
 
    0.892
S4RLD8_PETMA
Aminoadipate-semialdehyde dehydrogenase.
     
 0.652
S4RV84_PETMA
L-type lectin-like domain-containing protein.
    
 0.616
S4R4N3_PETMA
ATPase copper transporting beta.
  
 
 0.584
S4RAI8_PETMA
Uncharacterized protein.
  
 
 0.584
S4RXR6_PETMA
Uncharacterized protein.
  
 
 0.584
S4RFF1_PETMA
Secretion associated, Ras related GTPase 1B; Belongs to the small GTPase superfamily. SAR1 family.
     
 0.490
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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