STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RFN0_PETMAUncharacterized protein. (355 aa)    
Predicted Functional Partners:
S4RA10_PETMA
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.769
S4RAM8_PETMA
DNA polymerase.
   
 0.746
S4RDE2_PETMA
Helicase ATP-binding domain-containing protein.
    
 0.720
S4REK3_PETMA
Helicase ATP-binding domain-containing protein.
    
 0.720
FANCM
Uncharacterized protein.
    
 0.720
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.717
S4RGF7_PETMA
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.709
S4R805_PETMA
MUS81 structure-specific endonuclease subunit.
    
 0.702
S4RSP5_PETMA
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.702
S4RZF0_PETMA
Helicase ATP-binding domain-containing protein.
   
 0.677
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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