STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RFS4_PETMASoHo domain-containing protein. (146 aa)    
Predicted Functional Partners:
S4RUW3_PETMA
GTP_cyclohydroI domain-containing protein.
    
   0.923
S4RFV7_PETMA
SH3 and PX domains 2Aa.
    
 0.883
S4RUY7_PETMA
Uncharacterized protein.
    
 0.864
S4RGD7_PETMA
Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.
    
 0.805
S4RNI1_PETMA
Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.
    
 0.805
S4RC73_PETMA
Catenin (cadherin-associated protein), alpha 1.
    
 0.754
S4RP96_PETMA
Catenin (cadherin-associated protein), alpha-like 1.
    
 0.754
PXN-2
Paxillin.
    
 0.701
S4R6P1_PETMA
Cbl-PTB domain-containing protein.
    
 0.671
S4RSM3_PETMA
Integrin beta; Belongs to the integrin beta chain family.
     
 0.651
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.