Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
S4RFV9_PETMARrp44_S1 domain-containing protein. (162 aa)    
Predicted Functional Partners:
S4R7N1_PETMA
Rrp44_CSD1 domain-containing protein.
 
      0.749
S4S040_PETMA
Uncharacterized protein.
 
      0.699
S4RYC3_PETMA
Rrp44_CSD1 domain-containing protein.
 
      0.681
S4RXG7_PETMA
DIS3 exosome endoribonuclease and 3'-5' exoribonuclease.
 
      0.678
S4R7X0_PETMA
Exosome component 4.
   
 0.675
S4RGS1_PETMA
RNB domain-containing protein.
 
      0.647
S4RS28_PETMA
Uncharacterized protein.
 
      0.645
S4RZJ8_PETMA
Mtr4 exosome RNA helicase.
   
 0.619
S4R4U0_PETMA
Exosome component 1.
   
 0.609
S4RJI1_PETMA
Exosome component 9.
   
 0.590
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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