S4RFW6_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R5I8_PETMA	S4RC51_PETMA	ENSPMAP00000000468	ENSPMAP00000002783	Spermatogenesis associated 4.	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon).	0.752
S4R5I8_PETMA	S4RFW6_PETMA	ENSPMAP00000000468	ENSPMAP00000004098	Spermatogenesis associated 4.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.793
S4RC51_PETMA	S4R5I8_PETMA	ENSPMAP00000002783	ENSPMAP00000000468	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon).	Spermatogenesis associated 4.	0.752
S4RC51_PETMA	S4RFW6_PETMA	ENSPMAP00000002783	ENSPMAP00000004098	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon).	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.794
S4RDI2_PETMA	S4RFW6_PETMA	ENSPMAP00000003264	ENSPMAP00000004098	Transcription factor AP-2 epsilon.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.876
S4RDI2_PETMA	S4RJD3_PETMA	ENSPMAP00000003264	ENSPMAP00000005315	Transcription factor AP-2 epsilon.	E1A binding protein p300 a.	0.632
S4RDI2_PETMA	S4RJQ2_PETMA	ENSPMAP00000003264	ENSPMAP00000005435	Transcription factor AP-2 epsilon.	Nucleophosmin 1b.	0.635
S4RDI2_PETMA	S4RKI1_PETMA	ENSPMAP00000003264	ENSPMAP00000005714	Transcription factor AP-2 epsilon.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.568
S4RE86_PETMA	S4RFW6_PETMA	ENSPMAP00000003518	ENSPMAP00000004098	FERM domain containing 6.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.613
S4RFW6_PETMA	S4R5I8_PETMA	ENSPMAP00000004098	ENSPMAP00000000468	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	Spermatogenesis associated 4.	0.793
S4RFW6_PETMA	S4RC51_PETMA	ENSPMAP00000004098	ENSPMAP00000002783	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon).	0.794
S4RFW6_PETMA	S4RDI2_PETMA	ENSPMAP00000004098	ENSPMAP00000003264	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	Transcription factor AP-2 epsilon.	0.876
S4RFW6_PETMA	S4RE86_PETMA	ENSPMAP00000004098	ENSPMAP00000003518	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	FERM domain containing 6.	0.613
S4RFW6_PETMA	S4RHG8_PETMA	ENSPMAP00000004098	ENSPMAP00000004650	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	Ash2 like, histone lysine methyltransferase complex subunit.	0.564
S4RFW6_PETMA	S4RJD3_PETMA	ENSPMAP00000004098	ENSPMAP00000005315	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	E1A binding protein p300 a.	0.673
S4RFW6_PETMA	S4RJQ2_PETMA	ENSPMAP00000004098	ENSPMAP00000005435	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	Nucleophosmin 1b.	0.635
S4RFW6_PETMA	S4RKI1_PETMA	ENSPMAP00000004098	ENSPMAP00000005714	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.568
S4RFW6_PETMA	S4RMA7_PETMA	ENSPMAP00000004098	ENSPMAP00000006343	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	FERM domain containing 6.	0.757
S4RFW6_PETMA	S4S0E6_PETMA	ENSPMAP00000004098	ENSPMAP00000010937	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	Uncharacterized protein.	0.876
S4RHG8_PETMA	S4RFW6_PETMA	ENSPMAP00000004650	ENSPMAP00000004098	Ash2 like, histone lysine methyltransferase complex subunit.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.564