Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RFW8_PETMAABC transporter domain-containing protein. (483 aa)    
Predicted Functional Partners:
S4RKG6_PETMA
Uncharacterized protein.
 
     0.947
S4RNN9_PETMA
ABC transporter domain-containing protein.
 
    
0.916
S4RYR0_PETMA
ABC transporter domain-containing protein.
 
     
0.899
S4R9C4_PETMA
Uncharacterized protein.
    
  0.601
S4RTR1_PETMA
Retinoid X receptor, gamma b.
    
 0.599
S4RAL1_PETMA
C2 domain containing 3 centriole elongation regulator.
      
 0.597
S4RB97_PETMA
NR LBD domain-containing protein.
    
 0.595
S4RWQ7_PETMA
Thyroid hormone receptor beta.
    
 0.546
S4RX20_PETMA
SUN domain-containing protein.
    
 
 0.527
S4RFP6_PETMA
Nuclear receptor domain-containing protein.
    
 0.503
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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