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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RFW8_PETMAABC transporter domain-containing protein. (483 aa)    
Predicted Functional Partners:
S4RKG6_PETMA
Uncharacterized protein.
 
     0.947
S4RNN9_PETMA
ABC transporter domain-containing protein.
 
    
0.916
S4RYR0_PETMA
ABC transporter domain-containing protein.
 
     
0.899
S4RTR1_PETMA
Retinoid X receptor, gamma b.
    
 0.610
S4RB97_PETMA
NR LBD domain-containing protein.
    
 0.591
S4RWQ7_PETMA
Thyroid hormone receptor beta.
    
 0.573
S4RFP6_PETMA
Nuclear receptor domain-containing protein.
    
 0.534
S4RMP0_PETMA
ATP synthase F1 subunit gamma.
   
   0.508
S4RR89_PETMA
ATP synthase F1 subunit delta.
    
   0.491
VDR
Vitamin D receptor.
    
 0.477
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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