Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4RFY1_PETMATumor protein p63 regulated 1-like. (172 aa)    
Predicted Functional Partners:
S4RLS2_PETMA
Serine and arginine rich splicing factor 2b.
   
 0.870
S4RC87_PETMA
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.711
S4RVW8_PETMA
Small nuclear ribonucleoprotein 70 (U1).
   
 0.709
S4RI52_PETMA
Serine and arginine rich splicing factor 11.
   
 0.690
S4RH22_PETMA
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.684
S4RUU3_PETMA
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.668
GPR162
G protein-coupled receptor 153.
    
 0.664
S4RJK2_PETMA
Polymerase (DNA-directed), delta interacting protein 3.
   
 0.649
SRSF5
Serine and arginine rich splicing factor 5b.
   
 0.631
S4RUD2_PETMA
Serine and arginine rich splicing factor 4.
   
 0.631
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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