STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RFY1_PETMATumor protein p63 regulated 1-like. (172 aa)    
Predicted Functional Partners:
S4RLS2_PETMA
Serine and arginine rich splicing factor 2b.
   
 0.917
S4RC87_PETMA
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.797
S4RVW8_PETMA
Small nuclear ribonucleoprotein 70 (U1).
   
 0.778
SRSF5
Serine and arginine rich splicing factor 5b.
   
 0.761
S4RUD2_PETMA
Serine and arginine rich splicing factor 4.
   
 0.761
S4RYP0_PETMA
Uncharacterized protein.
   
 0.761
S4RWB7_PETMA
Uncharacterized protein.
    
 0.749
S4RI52_PETMA
Serine and arginine rich splicing factor 11.
   
 0.728
S4RPR5_PETMA
Cytotoxic granule-associated RNA binding protein 1, like.
   
 0.723
S4RUU3_PETMA
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.712
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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