STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RGA5_PETMAUncharacterized protein. (526 aa)    
Predicted Functional Partners:
S4RSL5_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
 
 
 
 0.953
S4RIY0_PETMA
CHDNT domain-containing protein.
 
 
 
 0.927
S4RDI0_PETMA
FACT-Spt16_Nlob domain-containing protein.
    
 
 0.849
S4RJB6_PETMA
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.808
S4RM85_PETMA
ARID domain-containing protein.
   
 0.793
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
   
 0.793
S4RR50_PETMA
Transcription elongation factor SPT5.
    
 
 0.792
S4RL46_PETMA
LSM14A mRNA processing body assembly factor a.
   
 
 0.786
S4RRR6_PETMA
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
  
 0.769
S4RSY1_PETMA
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.759
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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