Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4RGD1_PETMAUncharacterized protein. (1676 aa)    
Predicted Functional Partners:
S4R5W3_PETMA
Spatacsin_C domain-containing protein.
   
 
 0.950
S4RBS1_PETMA
SPG11 vesicle trafficking associated, spatacsin.
   
 
 0.950
S4R9W8_PETMA
FYVE-type domain-containing protein.
 
     0.948
S4RNN2_PETMA
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
      
 0.664
S4RZP3_PETMA
RING-type domain-containing protein.
      
 0.646
S4RMZ4_PETMA
Tectonin beta-propeller repeat containing 2.
      
 0.597
S4RFL1_PETMA
F-box protein 7.
      
 0.553
S4RS10_PETMA
Taxilin alpha.
      
 0.552
S4RW45_PETMA
Uncharacterized protein.
      
 0.552
S4RPZ8_PETMA
Prospero domain-containing protein.
      
 0.547
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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