STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RGE6_PETMARNA binding motif protein 25. (848 aa)    
Predicted Functional Partners:
S4RI13_PETMA
LUC7-like (S. cerevisiae).
   
 0.981
S4RVW8_PETMA
Small nuclear ribonucleoprotein 70 (U1).
   
 
 0.959
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
   
 
 0.958
S4RH22_PETMA
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.954
S4R8V9_PETMA
Uncharacterized protein.
   
 0.946
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.939
S4R9W9_PETMA
Splicing factor 3b, subunit 3.
    
 
 0.938
S4RU57_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.934
S4RDS5_PETMA
PRP40 pre-mRNA processing factor 40 homolog A.
   
 0.905
S4RTA8_PETMA
PRP39 pre-mRNA processing factor 39 homolog (yeast).
   
 
 0.881
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.