S4RGF2_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

S4RGF2_PETMA

Tripartite motif containing 54. (419 aa)

Predicted Functional Partners:

UBB

0.726

S4RP44_PETMA

0.719

S4RT88_PETMA

0.647

S4RI29_PETMA

0.575

S4RYP1_PETMA

0.575

UBE2N

0.561

S4RQA2_PETMA

0.554

DDX41

0.546

S4RF48_PETMA

0.543

S4RR10_PETMA

0.541

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	S4RGF2_PETMA	ENSPMAP00000005519	ENSPMAP00000004284	DEAD-box helicase 41.	Tripartite motif containing 54.	0.546
DDX41	S4RR10_PETMA	ENSPMAP00000005519	ENSPMAP00000007646	DEAD-box helicase 41.	Zinc finger, AN1-type domain 4.	0.429
DDX41	UBB	ENSPMAP00000005519	ENSPMAP00000007938	DEAD-box helicase 41.	Ubiquitin B.	0.582
S4RF48_PETMA	S4RGF2_PETMA	ENSPMAP00000003830	ENSPMAP00000004284	Growth arrest-specific 7a.	Tripartite motif containing 54.	0.543
S4RF48_PETMA	S4RI29_PETMA	ENSPMAP00000003830	ENSPMAP00000004861	Growth arrest-specific 7a.	Ubiquitin-conjugating enzyme E2T (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.528
S4RF48_PETMA	S4RP44_PETMA	ENSPMAP00000003830	ENSPMAP00000006980	Growth arrest-specific 7a.	Ubiquitin-like domain-containing protein.	0.878
S4RF48_PETMA	S4RQA2_PETMA	ENSPMAP00000003830	ENSPMAP00000007388	Growth arrest-specific 7a.	Ion_trans domain-containing protein.	0.567
S4RF48_PETMA	S4RR10_PETMA	ENSPMAP00000003830	ENSPMAP00000007646	Growth arrest-specific 7a.	Zinc finger, AN1-type domain 4.	0.901
S4RF48_PETMA	S4RYP1_PETMA	ENSPMAP00000003830	ENSPMAP00000010332	Growth arrest-specific 7a.	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like; Belongs to the ubiquitin-conjugating enzyme family.	0.528
S4RF48_PETMA	UBB	ENSPMAP00000003830	ENSPMAP00000007938	Growth arrest-specific 7a.	Ubiquitin B.	0.878
S4RF48_PETMA	UBE2N	ENSPMAP00000003830	ENSPMAP00000009916	Growth arrest-specific 7a.	Ubiquitin conjugating enzyme E2 N.	0.528
S4RGF2_PETMA	DDX41	ENSPMAP00000004284	ENSPMAP00000005519	Tripartite motif containing 54.	DEAD-box helicase 41.	0.546
S4RGF2_PETMA	S4RF48_PETMA	ENSPMAP00000004284	ENSPMAP00000003830	Tripartite motif containing 54.	Growth arrest-specific 7a.	0.543
S4RGF2_PETMA	S4RI29_PETMA	ENSPMAP00000004284	ENSPMAP00000004861	Tripartite motif containing 54.	Ubiquitin-conjugating enzyme E2T (putative); Belongs to the ubiquitin-conjugating enzyme family.	0.575
S4RGF2_PETMA	S4RP44_PETMA	ENSPMAP00000004284	ENSPMAP00000006980	Tripartite motif containing 54.	Ubiquitin-like domain-containing protein.	0.719
S4RGF2_PETMA	S4RQA2_PETMA	ENSPMAP00000004284	ENSPMAP00000007388	Tripartite motif containing 54.	Ion_trans domain-containing protein.	0.554
S4RGF2_PETMA	S4RR10_PETMA	ENSPMAP00000004284	ENSPMAP00000007646	Tripartite motif containing 54.	Zinc finger, AN1-type domain 4.	0.541
S4RGF2_PETMA	S4RT88_PETMA	ENSPMAP00000004284	ENSPMAP00000008428	Tripartite motif containing 54.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.647
S4RGF2_PETMA	S4RYP1_PETMA	ENSPMAP00000004284	ENSPMAP00000010332	Tripartite motif containing 54.	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like; Belongs to the ubiquitin-conjugating enzyme family.	0.575
S4RGF2_PETMA	UBB	ENSPMAP00000004284	ENSPMAP00000007938	Tripartite motif containing 54.	Ubiquitin B.	0.726