STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RGI1_PETMAAlkB homolog 1, histone H2A dioxygenase. (181 aa)    
Predicted Functional Partners:
S4RUY7_PETMA
Uncharacterized protein.
    
  0.724
S4RU24_PETMA
Methyltransferase like 3; Belongs to the MT-A70-like family.
   
  
 0.596
S4R7R7_PETMA
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
      
 0.592
S4RVE0_PETMA
AlkB homolog 5, RNA demethylase.
      
 0.570
S4RYP4_PETMA
Methyltransferase like 4; Belongs to the MT-A70-like family.
   
  
 0.543
S4RXB8_PETMA
Uncharacterized protein.
   
  
 0.512
S4RJ54_PETMA
tRNA methyltransferase subunit 11-2.
   
 
 0.510
S4RYM3_PETMA
Jumonji domain containing 4.
   
  
 0.494
YTHDC2
YTH domain containing 2.
     
 0.484
S4RIP0_PETMA
AlkB homolog 8, tRNA methyltransferase.
      
 0.483
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.