Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBR1T-box brain transcription factor 1. (577 aa)    
Predicted Functional Partners:
S4R667_PETMA
Uncharacterized protein.
    
 0.633
S4RUC1_PETMA
Forkhead box G1a.
   
 
 0.630
S4RQD6_PETMA
GATA binding protein 3.
    
 0.626
S4R848_PETMA
Uncharacterized protein.
   
 
 0.621
S4RPN6_PETMA
Empty spiracles homeobox 2.
    
 0.619
S4R7D4_PETMA
NK2 homeobox 1.
    
 0.600
S4R4S7_PETMA
GATA binding protein 4.
    
 0.571
S4RQ68_PETMA
Uncharacterized protein.
    
 
 0.553
S4RKZ0_PETMA
DNA-binding protein SATB.
   
 
 0.539
S4RJ05_PETMA
Fork-head domain-containing protein.
   
 0.529
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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