Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4RGN5_PETMAUncharacterized protein. (225 aa)    
Predicted Functional Partners:
DDX28
DEAD-box helicase 28.
 
     0.951
S4RIA6_PETMA
Neuroguidin, EIF4E binding protein.
   
 0.932
S4R5N2_PETMA
WD repeat domain 46.
   
 0.908
S4RSR7_PETMA
RNA helicase.
  
 
 0.899
S4R7L5_PETMA
GN3L_Grn1 domain-containing protein.
  
  0.856
S4RDW7_PETMA
Uncharacterized protein.
  
 0.838
S4RR36_PETMA
Spb1_C domain-containing protein.
   
 0.834
S4R581_PETMA
TRAUB domain-containing protein.
   
   0.827
S4REJ8_PETMA
NOP14 nucleolar protein homolog (yeast).
   
 0.815
S4RSV3_PETMA
Pescadillo.
   
  0.814
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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