STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RGW6_PETMAUncharacterized protein. (151 aa)    
Predicted Functional Partners:
S4RXT1_PETMA
Small-conductance calcium-activated potassium channel 2a.
 
      0.900
KCNMB4
Potassium calcium-activated channel subfamily M regulatory beta subunit 4.
     
 0.760
KCNK16
Potassium two pore domain channel subfamily K member 16; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
     
 0.754
LIPT2
Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.
     
 0.754
S4RBL8_PETMA
Potassium inwardly-rectifying channel, subfamily J, member 13.
   
 
 0.753
S4RHH3_PETMA
Potassium large conductance calcium-activated channel, subfamily M, beta member 2.
     
 0.719
S4RDW9_PETMA
Potassium channel subfamily K member f; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
     
 0.655
KCNMA1
Potassium calcium-activated channel subfamily M alpha 1.
     
 0.640
S4RP75_PETMA
Uncharacterized protein.
     
 0.640
S4RSF6_PETMA
Uncharacterized protein.
     
 0.640
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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