Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4RGY9_PETMABrix domain containing 2. (142 aa)    
Predicted Functional Partners:
S4RU29_PETMA
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.996
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.994
S4RLB7_PETMA
Ribosomal L1 domain containing 1.
   
 
 0.994
S4RS71_PETMA
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.994
S4R731_PETMA
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.993
S4RPR3_PETMA
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.991
S4R7L5_PETMA
GN3L_Grn1 domain-containing protein.
   
 
 0.990
S4R990_PETMA
RNA binding motif protein 34.
   
 
 0.990
S4RDW7_PETMA
Uncharacterized protein.
   
 
 0.990
S4RXX4_PETMA
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.990
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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